Transcript: lnc-GAS2-1:14

Basic information

LNCipedia transcript ID: lnc-GAS2-1:14 
LNCipedia gene ID: lnc-GAS2-1
Ensembl Gene ID: ENSG00000255418
Ensembl Transcript ID: ENST00000530576
Location (hg38): chr11:23164900-23166786
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530576; ENST00000530576.1; RP11-266A24.1-001; OTTHUMT00000387733.1; NONHSAT018418; ENST00000530576.5
Alternative gene names: ENSG00000255418; RP11-266A24.1; ENSG00000255418.1; OTTHUMG00000166075.1; ENSG00000255418.5; AC090092.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.4023 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAS2-1:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GAS2-2:1
3.1 lnc-GAS2-2:1
4.0 lnc-GAS2-2:1
4.1 lnc-GAS2-1:14
5.0 lnc-GAS2-1:14
5.1 lnc-KCNC1-48:14
5.2 lnc-GAS2-1:14