Transcript: lnc-GAS2-1:15

Basic information

LNCipedia transcript ID: lnc-GAS2-1:15 
LNCipedia gene ID: lnc-GAS2-1
Ensembl Gene ID: ENSG00000255418
Ensembl Transcript ID: ENST00000533591
Location (hg38): chr11:23165187-23203161
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 685 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533591; ENST00000533591.1; RP11-266A24.1-002; OTTHUMT00000387734.1; NONHSAT018419
Alternative gene names: ENSG00000255418; RP11-266A24.1; ENSG00000255418.1; OTTHUMG00000166075.1; ENSG00000255418.5; AC090092.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.8625 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAS2-1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GAS2-2:2
3.1 lnc-GAS2-2:2
4.0 lnc-GAS2-2:2
4.1 lnc-GAS2-1:15
5.0 lnc-GAS2-1:15
5.1 lnc-KCNC1-48:15
5.2 lnc-GAS2-1:15