Transcript: lnc-GAS2-1:3

Basic information

LNCipedia transcript ID: lnc-GAS2-1:3 
LNCipedia gene ID: lnc-GAS2-1
Ensembl Gene ID: ENSG00000246225
Ensembl Transcript ID: ENST00000499625
Location (hg38): chr11:22829422-22945393
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2029 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499625; ENST00000499625.1; RP11-17A1.3-003; OTTHUMT00000388547.1; NONHSAT018407
Alternative gene names: ENSG00000246225; RP11-17A1.3; ENSG00000246225.2; OTTHUMG00000166073.2; ENSG00000246225.6; AC006299.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.7774 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAS2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GAS2-1:3
3.1 lnc-GAS2-1:3
4.0 lnc-GAS2-1:3
4.1 lnc-GAS2-1:3
5.0 lnc-GAS2-1:3
5.1 lnc-KCNC1-48:11
5.2 lnc-GAS2-1:3