Transcript: lnc-GATA3-2:2

Basic information

LNCipedia transcript ID: lnc-GATA3-2:2 
LNCipedia gene ID: lnc-GATA3-2
Location (hg38): chr10:8042018-8042869
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 269 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018120; NONHSAT011304
Alternative gene names: XLOC_008380; linc-GATA3-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.6592 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATA3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GATA3-2:2
3.1 lnc-GATA3-2:2
4.0 lnc-GATA3-2:2
4.1 lnc-GATA3-2:2
5.0 lnc-GATA3-2:2
5.1 lnc-NPY4R2-431:2
5.2 lnc-GATA3-2:2