Transcript: lnc-GATA3-6:1

Basic information

LNCipedia transcript ID: lnc-GATA3-6:1 
LNCipedia gene ID: lnc-GATA3-6
Ensembl Gene ID: ENSG00000234752
Ensembl Transcript ID: ENST00000447297
RefSeq ID: NR_131944
Location (hg38): chr10:8897989-8914596
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017785; ENST00000447297; ENST00000447297.1; RP11-428L9.1-001; OTTHUMT00000046733.1; NONHSAT011333; NR_131944.1
Alternative gene names: XLOC_008385; linc-CELF2-6; ENSG00000234752; RP11-428L9.1; ENSG00000234752.1; OTTHUMG00000017650.1; AC044784.2; LOC105755953


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.5784 non-coding 
CPAT coding probability 9.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATA3-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GATA3-6:1
3.1 lnc-GATA3-6:1
4.0 lnc-GATA3-6:1
4.1 lnc-GATA3-6:1
5.0 lnc-GATA3-6:1
5.1 lnc-NPY4R2-417:2
5.2 lnc-GATA3-6:1