Transcript: lnc-GATA3-7:1

Basic information

LNCipedia transcript ID: lnc-GATA3-7:1 
LNCipedia gene ID: lnc-GATA3-7
Ensembl Gene ID: ENSG00000223808
Ensembl Transcript ID: ENST00000456526
Location (hg38): chr10:8970125-8973468
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 677 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017786; ENST00000456526; ENST00000456526.1; RP11-428L9.2-001; OTTHUMT00000046734.1; NONHSAT011337
Alternative gene names: XLOC_008386; linc-CELF2-5; ENSG00000223808; RP11-428L9.2; ENSG00000223808.1; OTTHUMG00000017651.1; AC044784.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.6551 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATA3-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GATA3-7:1
3.1 lnc-GATA3-7:1
4.0 lnc-GATA3-7:1
4.1 lnc-GATA3-7:1
5.0 lnc-GATA3-7:1
5.1 lnc-NPY4R2-415:5
5.2 lnc-GATA3-7:1