Transcript: lnc-GATA4-1:4

Basic information

LNCipedia transcript ID: lnc-GATA4-1:4 
LNCipedia gene ID: lnc-GATA4-1
Ensembl Gene ID: ENSG00000255394
Ensembl Transcript ID: ENST00000625198
Location (hg38): chr8:11761387-11762800
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1414 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625198.1
Alternative gene names: ENSG00000255394.4; C8orf49


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -69.1405 non-coding 
CPAT coding probability 84.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GATA4-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C8orf49-1:3
4.1 lnc-C8orf49-1:3
5.0 lnc-C8orf49-1:3
5.1 lnc-DEFB106A-70:2
5.2 lnc-GATA4-1:4