Transcript: lnc-GATA4-1:5

Basic information

LNCipedia transcript ID: lnc-GATA4-1:5 
LNCipedia gene ID: lnc-GATA4-1
Location (hg38): chr8:11762117-11762916
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 800 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT147620; FPKM1_group_30902_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.4902 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATA4-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8orf49-1:2
4.0 lnc-C8orf49-1:2
4.1 lnc-C8orf49-1:2
5.0 lnc-C8orf49-1:2
5.1 lnc-DEFB106A-70:3
5.2 lnc-GATA4-1:5