Transcript: lnc-GATM-1:2

Basic information

LNCipedia transcript ID: lnc-GATM-1:2 
LNCipedia gene ID: lnc-GATM-1
Location (hg38): chr15:45379202-45402484
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1102 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT042242
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.536 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATM-1:2 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC30A4-1:5
4.0 lnc-GATM-1:2
4.1 lnc-GATM-1:2
5.0 lnc-GATM-1:2
5.1 lnc-SERINC4-36:1
5.2 lnc-GATM-1:2