Transcript: lnc-GATM-1:5

Basic information

LNCipedia transcript ID: lnc-GATM-1:5 
LNCipedia gene ID: lnc-GATM-1
Location (hg38): chr15:45380500-45397346
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 572 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000527933.2; RP11-519G16.1-002; OTTHUMT00000387870.2; NONHSAT042243
Alternative gene names: ENSG00000230288.4; RP11-519G16.1; OTTHUMG00000166113.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4371 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATM-1:5 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC30A4-1:3
4.0 lnc-GATM-1:5
4.1 lnc-GATM-1:5
5.0 lnc-GATM-1:5
5.1 lnc-SERINC4-36:4
5.2 lnc-GATM-1:5