Transcript: lnc-GBP5-11:1

Basic information

LNCipedia transcript ID: lnc-GBP5-11:1 
LNCipedia gene ID: lnc-GBP5-11
Ensembl Gene ID: ENSG00000272931
Ensembl Transcript ID: ENST00000609194
Location (hg38): chr1:89820174-89820868
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 695 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609194.1
Alternative gene names: ENSG00000272931.1; RP5-943J3.2; AC099568.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.0639 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GBP5-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GBP5-11:1
4.0 lnc-GBP5-11:1
4.1 lnc-GBP5-11:1
5.0 lnc-GBP5-11:1
5.1 lnc-GBP5-11:1
5.2 lnc-GBP5-11:1