Transcript: lnc-GBX2-1:3

Basic information

LNCipedia transcript ID: lnc-GBX2-1:3 
LNCipedia gene ID: lnc-GBX2-1
Location (hg38): chr2:235827477-235827719
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 243 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: uc_110_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -392.67 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GBX2-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC064874.1.1-1:1
4.0 lnc-AC064874.1.1-1:1
4.1 lnc-AC064874.1.1-1:1
5.0 lnc-AC064874.1.1-1:1
5.1 lnc-GBX2-2:1
5.2 lnc-GBX2-1:3