Transcript: lnc-GCLC-1:10

Basic information

LNCipedia transcript ID: lnc-GCLC-1:10 
LNCipedia gene ID: lnc-GCLC-1
Ensembl Gene ID: ENSG00000231683
Ensembl Transcript ID: ENST00000504928
Location (hg38): chr6:53564297-53583333
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 482 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011506; ENST00000504928.1; RP1-27K12.2-006; OTTHUMT00000359963.1; NONHSAT113187
Alternative gene names: XLOC_005747; linc-GCLC; ENSG00000231683.2; RP1-27K12.2; OTTHUMG00000014879.2; ENSG00000231683.6; AL033397.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.6027 non-coding 
CPAT coding probability 8.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GCLC-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLHL31-1:5
3.1 lnc-KLHL31-1:8
4.0 lnc-GCLC-1:10
4.1 lnc-GCLC-1:10
5.0 lnc-GCLC-1:10
5.1 lnc-GSTA5-13:9
5.2 lnc-GCLC-1:10