Transcript: lnc-GDAP2-1:5

Basic information

LNCipedia transcript ID: lnc-GDAP2-1:5 
LNCipedia gene ID: lnc-GDAP2-1
Ensembl Gene ID: ENSG00000236866
Ensembl Transcript ID: ENST00000440801
Location (hg38): chr1:117596832-117605711
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 377 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000615; ENST00000440801.1; AL157902.3-001; OTTHUMT00000038427.1; NONHSAT005483; ENST00000440801.5
Alternative gene names: XLOC_000980; linc-VTCN1-2; ENSG00000236866.1; AL157902.3; OTTHUMG00000013706.1; ENSG00000236866.5; AL157902.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3873 non-coding 
CPAT coding probability 4.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDAP2-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GDAP2-1:5
3.1 lnc-GDAP2-1:5
4.0 lnc-GDAP2-1:5
4.1 lnc-GDAP2-1:5
5.0 lnc-GDAP2-1:5
5.1 lnc-CD58-22:13
5.2 lnc-GDAP2-1:5