Transcript: lnc-GDE1-1:4

Basic information

LNCipedia transcript ID: lnc-GDE1-1:4 
LNCipedia gene ID: lnc-GDE1-1
Location (hg38): chr16:19459961-19487901
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 699 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260592.1|FTMT26100000150.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 252.8618 coding 
CPAT coding probability 26.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GDE1-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GDE1-1:4
5.0 lnc-GDE1-1:4
5.1 lnc-MARF1-55:1
5.2 lnc-GDE1-1:4