Transcript: lnc-GDI2-1:3

Basic information

LNCipedia transcript ID: lnc-GDI2-1:3 
LNCipedia gene ID: lnc-GDI2-1
Ensembl Gene ID: ENSG00000226647
Ensembl Transcript ID: ENST00000596567
Location (hg38): chr10:5712420-5714423
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 945 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT011180; ENST00000596567.1
Alternative gene names: ENSG00000226647.2; RP11-336A10.2; AL365356.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.5889 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDI2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GDI2-1:3
4.0 lnc-GDI2-1:3
4.1 lnc-GDI2-1:3
5.0 lnc-GDI2-1:3
5.1 lnc-KLF6-62:3
5.2 lnc-GDI2-1:3