Transcript: lnc-GDPD4-1:1

Basic information

LNCipedia transcript ID: lnc-GDPD4-1:1 
LNCipedia gene ID: lnc-GDPD4-1
Location (hg38): chr11:77124671-77126155
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 407 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000529777.1; RP11-689N19.3-003; OTTHUMT00000382746.1; NONHSAT023204
Alternative gene names: ENSG00000254808.1; RP11-689N19.3; OTTHUMG00000165222.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.4316 non-coding 
CPAT coding probability 1.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDPD4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GDPD4-1:1
4.0 lnc-GDPD4-1:1
4.1 lnc-GDPD4-1:1
5.0 lnc-GDPD4-1:1
5.1 lnc-INTS4-19:1
5.2 lnc-GDPD4-1:1