Transcript: lnc-GGA2-1:2

Basic information

LNCipedia transcript ID: lnc-GGA2-1:2 
LNCipedia gene ID: lnc-GGA2-1
Ensembl Gene ID: ENSG00000259782
Ensembl Transcript ID: ENST00000561624
Location (hg38): chr16:23446446-23447282
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 837 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561624.2
Alternative gene names: ENSG00000259782.2; CTD-2270L9.2; AC008915.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4358 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGA2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGA2-1:2
4.0 lnc-GGA2-1:2
4.1 lnc-GGA2-1:2
5.0 lnc-GGA2-1:2
5.1 lnc-SULT1A2-183:2
5.2 lnc-GGA2-1:2