Transcript: lnc-GGCT-1:18

Basic information

LNCipedia transcript ID: lnc-GGCT-1:18 
LNCipedia gene ID: lnc-GGCT-1
Location (hg38): chr7:30564513-30569002
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000584108.1; AC005154.6-015; OTTHUMT00000447706.1; NONHSAT119904
Alternative gene names: ENSG00000196295.5; AC005154.6; OTTHUMG00000152788.6; ENSG00000196295.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2629 non-coding 
CPAT coding probability 4.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCT-1:18
4.0 lnc-GGCT-1:18
4.1 lnc-GGCT-1:18
5.0 lnc-GGCT-1:18
5.1 lnc-PDE1C-13:60
5.2 lnc-GGCT-1:18