Transcript: lnc-GGCT-1:2

Basic information

LNCipedia transcript ID: lnc-GGCT-1:2 
LNCipedia gene ID: lnc-GGCT-1
Ensembl Gene ID: ENSG00000196295
Ensembl Transcript ID: ENST00000579174
Location (hg38): chr7:30574704-30594808
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 755 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579174.1; AC005154.6-007; OTTHUMT00000447712.1; NONHSAT119913; ENST00000579174.5
Alternative gene names: ENSG00000196295.5; AC005154.6; OTTHUMG00000152788.6; ENSG00000196295.7; ENSG00000196295.11; AC005154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.0615 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCT-1:2
4.0 lnc-GGCT-1:2
4.1 lnc-GGCT-1:2
5.0 lnc-GGCT-1:2
5.1 lnc-PDE1C-13:2
5.2 lnc-GGCT-1:2