Transcript: lnc-GGCT-1:20

Basic information

LNCipedia transcript ID: lnc-GGCT-1:20 
LNCipedia gene ID: lnc-GGCT-1
Ensembl Gene ID: ENSG00000196295
Ensembl Transcript ID: ENST00000580902
Location (hg38): chr7:30523975-30563998
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 926 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580902.1; AC005154.6-018; OTTHUMT00000447700.2; NONHSAT119877; ENST00000580902.5
Alternative gene names: ENSG00000196295.5; AC005154.6; OTTHUMG00000152788.6; ENSG00000196295.7; ENSG00000196295.11; AC005154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.535 non-coding 
CPAT coding probability 12.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:20 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCT-1:20
4.0 lnc-GGCT-1:20
4.1 lnc-GGCT-1:20
5.0 lnc-GGCT-1:20
5.1 lnc-PDE1C-13:67
5.2 lnc-GGCT-1:20