Transcript: lnc-GGCT-1:24

Basic information

LNCipedia transcript ID: lnc-GGCT-1:24 
LNCipedia gene ID: lnc-GGCT-1
Location (hg38): chr7:30516991-30561516
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 983 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000578293.1; AC005154.6-017; OTTHUMT00000447699.2
Alternative gene names: ENSG00000196295.5; AC005154.6; OTTHUMG00000152788.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.1806 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:24 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCT-1:24
4.0 lnc-GGCT-1:24
4.1 lnc-GGCT-1:24
5.0 lnc-GGCT-1:24
5.1 lnc-PDE1C-13:76
5.2 lnc-GGCT-1:24