Transcript: lnc-GGCT-1:26

Basic information

LNCipedia transcript ID: lnc-GGCT-1:26 
LNCipedia gene ID: lnc-GGCT-1
Ensembl Gene ID: ENSG00000196295
Ensembl Transcript ID: ENST00000440438
Location (hg38): chr7:30547166-30550781
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 353 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440438; ENST00000440438.2; AC005154.9-001; OTTHUMT00000327996.2; NONHSAT119888; ENST00000440438.6
Alternative gene names: ENSG00000234133; AC005154.9; ENSG00000234133.2; OTTHUMG00000152804.2; ENSG00000196295.7; AC005154.6; ENSG00000196295.11; AC005154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.0948 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:26 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GGCT-1:1
3.1 lnc-GGCT-1:26
4.0 lnc-GGCT-1:26
4.1 lnc-GGCT-1:26
5.0 lnc-GGCT-1:26
5.1 lnc-PDE1C-13:89
5.2 lnc-GGCT-1:26