Transcript: lnc-GGCT-1:34

Basic information

LNCipedia transcript ID: lnc-GGCT-1:34 
LNCipedia gene ID: lnc-GGCT-1
RefSeq ID: NR_038889
Location (hg38): chr7:30548357-30577779
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3871 bp
Exons: 7
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT119889; NR_038889; NR_038889.1
Alternative gene names: LOC401320


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.8234 non-coding 
CPAT coding probability 15.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:34 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCT-1:34
4.0 lnc-GGCT-1:34
4.1 lnc-GGCT-1:34
5.0 lnc-GGCT-1:34
5.1 lnc-PDE1C-13:46
5.2 lnc-GGCT-1:34