Transcript: lnc-GGCT-1:46

Basic information

LNCipedia transcript ID: lnc-GGCT-1:46 
LNCipedia gene ID: lnc-GGCT-1
Ensembl Gene ID: ENSG00000196295
Ensembl Transcript ID: ENST00000578293
Location (hg38): chr7:30516975-30561516
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 999 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT119875; ENST00000578293.2; ENST00000578293.6
Alternative gene names: ENSG00000196295.7; AC005154.6; ENSG00000196295.11; AC005154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.1806 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:46 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCT-1:46
4.0 lnc-GGCT-1:46
4.1 lnc-GGCT-1:46
5.0 lnc-GGCT-1:46
5.1 lnc-PDE1C-13:77
5.2 lnc-GGCT-1:46