Transcript: lnc-GGCT-1:47

Basic information

LNCipedia transcript ID: lnc-GGCT-1:47 
LNCipedia gene ID: lnc-GGCT-1
Location (hg38): chr7:30561140-30561382
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 243 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_ge08_GARS_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.9911 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:47 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCT-1:47
4.0 lnc-GGCT-1:47
4.1 lnc-GGCT-1:47
5.0 lnc-GGCT-1:47
5.1 lnc-PDE1C-13:83
5.2 lnc-GGCT-1:47