Transcript: lnc-GGCT-1:54

Basic information

LNCipedia transcript ID: lnc-GGCT-1:54 
LNCipedia gene ID: lnc-GGCT-1
Ensembl Gene ID: ENSG00000196295
Ensembl Transcript ID: ENST00000614950
Location (hg38): chr7:30564144-30573148
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000614950.4
Alternative gene names: ENSG00000196295.11; AC005154.6; AC005154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.6519 non-coding 
CPAT coding probability 9.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:54 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GGCT-1:54
4.1 lnc-GGCT-1:54
5.0 lnc-GGCT-1:54
5.1 lnc-PDE1C-13:52
5.2 lnc-GGCT-1:54