Transcript: lnc-GGCT-1:55

Basic information

LNCipedia transcript ID: lnc-GGCT-1:55 
LNCipedia gene ID: lnc-GGCT-1
Ensembl Gene ID: ENSG00000196295
Ensembl Transcript ID: ENST00000621272
Location (hg38): chr7:30564147-30568994
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621272.1
Alternative gene names: ENSG00000196295.11; AC005154.6; AC005154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -266.7888 non-coding 
CPAT coding probability 5.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:55 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GGCT-1:55
4.1 lnc-GGCT-1:55
5.0 lnc-GGCT-1:55
5.1 lnc-PDE1C-13:61
5.2 lnc-GGCT-1:55