Transcript: lnc-GGCT-1:7

Basic information

LNCipedia transcript ID: lnc-GGCT-1:7 
LNCipedia gene ID: lnc-GGCT-1
Ensembl Gene ID: ENSG00000196295
Ensembl Transcript ID: ENST00000583664
Location (hg38): chr7:30578068-30594760
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 431 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583664.1; AC005154.6-021; OTTHUMT00000447721.1; ENST00000583664.5
Alternative gene names: ENSG00000196295.5; AC005154.6; OTTHUMG00000152788.6; ENSG00000196295.7; ENSG00000196295.11; AC005154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.2854 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGCT-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGCT-1:7
4.0 lnc-GGCT-1:7
4.1 lnc-GGCT-1:7
5.0 lnc-GGCT-1:7
5.1 lnc-PDE1C-13:24
5.2 lnc-GGCT-1:7