Transcript: lnc-GGT2-26:12

Basic information

LNCipedia transcript ID: lnc-GGT2-26:12 
LNCipedia gene ID: lnc-GGT2-26
Ensembl Gene ID: ENSG00000206142
Ensembl Transcript ID: ENST00000436681
Location (hg38): chr22:21300991-21309881
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3714 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436681; ENST00000436681.1; LINC00281-003; OTTHUMT00000320109.1; NONHSAT083652; ENST00000436681.5
Alternative gene names: ENSG00000206142; KB-1183D5.13; ENSG00000206142.4; LINC00281; OTTHUMG00000150795.1; ENSG00000206142.5; FAM230C; ENSG00000206142.9; AP000552.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.4521 non-coding 
CPAT coding probability 98.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GGT2-26:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GGT2-2:10
3.1 lnc-GGT2-2:10
4.0 lnc-GGT2-2:10
4.1 lnc-GGT2-2:10
5.0 lnc-GGT2-2:10
5.1 lnc-SCARF2-26:12
5.2 lnc-GGT2-26:12