Transcript: lnc-GGT2-26:13

Basic information

LNCipedia transcript ID: lnc-GGT2-26:13 
LNCipedia gene ID: lnc-GGT2-26
Location (hg38): chr22:21308766-21309443
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 651 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000440315; ENST00000440315.2; LINC00281-201; NONHSAT083655
Alternative gene names: ENSG00000206142; KB-1183D5.13; ENSG00000206142.4; LINC00281; OTTHUMG00000150795.1; ENSG00000206142.5; FAM230C


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.184 non-coding 
CPAT coding probability 25.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGT2-26:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GGT2-2:11
3.1 lnc-GGT2-2:11
4.0 lnc-GGT2-2:11
4.1 lnc-GGT2-2:11
5.0 lnc-GGT2-2:11
5.1 lnc-SCARF2-26:13
5.2 lnc-GGT2-26:13