Transcript: lnc-GGTLC3-3:1

Basic information

LNCipedia transcript ID: lnc-GGTLC3-3:1 
LNCipedia gene ID: lnc-GGTLC3-3
Ensembl Gene ID: ENSG00000278044
Ensembl Transcript ID: ENST00000621762
Location (hg38): chr22:18501794-18512187
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 358 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621762.1
Alternative gene names: ENSG00000278044.1; XXbac-B33L19.12; AC023490.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 57.1247 non-coding 
CPAT coding probability 6.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GGTLC3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GGTLC3-3:1
4.1 lnc-GGTLC3-3:1
5.0 lnc-GGTLC3-3:1
5.1 lnc-RTN4R-46:1
5.2 lnc-GGTLC3-3:1