Transcript: lnc-GIN1-1:2

Basic information

LNCipedia transcript ID: lnc-GIN1-1:2 
LNCipedia gene ID: lnc-GIN1-1
Ensembl Gene ID: ENSG00000248203
Ensembl Transcript ID: ENST00000507050
Location (hg38): chr5:103246048-103253519
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 485 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009741; ENST00000507050.1; CTC-503K11.2-001; OTTHUMT00000370477.1; NONHSAT103057
Alternative gene names: XLOC_004942; linc-GIN1-2; ENSG00000248203.1; CTC-503K11.2; OTTHUMG00000162810.1; AC011362.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.8808 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GIN1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GIN1-1:2
3.1 lnc-GIN1-1:2
4.0 lnc-GIN1-1:2
4.1 lnc-GIN1-1:2
5.0 lnc-GIN1-1:2
5.1 lnc-LOX-175:2
5.2 lnc-GIN1-1:2