Transcript: lnc-GINS2-2:3

Basic information

LNCipedia transcript ID: lnc-GINS2-2:3 
LNCipedia gene ID: lnc-GINS2-2
Ensembl Gene ID: ENSG00000270124
Ensembl Transcript ID: ENST00000602862
Location (hg38): chr16:85580009-85583571
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 601 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT144127; ENST00000602862.1
Alternative gene names: ENSG00000270124.1; RP11-118F19.1; AC092127.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.8647 non-coding 
CPAT coding probability 11.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GINS2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GINS2-2:3
4.0 lnc-GINS2-2:3
4.1 lnc-GINS2-2:3
5.0 lnc-GINS2-2:3
5.1 lnc-MTHFSD-20:6
5.2 lnc-GINS2-2:3