Transcript: lnc-GIP-2:1

Basic information

LNCipedia transcript ID: lnc-GIP-2:1 
LNCipedia gene ID: lnc-GIP-2
Ensembl Gene ID: ENSG00000251461
Ensembl Transcript ID: ENST00000504865
Location (hg38): chr17:49004731-49013725
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 432 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504865.1; RP11-501C14.6-001; OTTHUMT00000364055.1; NONHSAT054504; ENST00000504865.3
Alternative gene names: ENSG00000251461.1; RP11-501C14.6; OTTHUMG00000161175.1; ENSG00000251461.3; AC091133.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.3665 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GIP-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GIP-2:1
4.0 lnc-GIP-2:1
4.1 lnc-GIP-2:1
5.0 lnc-GIP-2:1
5.1 lnc-ZNF652-11:1
5.2 lnc-GIP-2:1