Transcript: lnc-GJE1-2:1

Basic information

LNCipedia transcript ID: lnc-GJE1-2:1 
LNCipedia gene ID: lnc-GJE1-2
Ensembl Gene ID: ENSG00000259828
Ensembl Transcript ID: ENST00000565399
Location (hg38): chr6:141447011-141451006
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3996 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565399.1; RP11-63E9.1-001; OTTHUMT00000431299.1
Alternative gene names: ENSG00000259828.1; RP11-63E9.1; OTTHUMG00000175944.1; AL355596.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.4982 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GJE1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GJE1-2:1
4.0 lnc-GJE1-2:1
4.1 lnc-GJE1-2:1
5.0 lnc-GJE1-2:1
5.1 lnc-GJE1-2:1
5.2 lnc-GJE1-2:1