Transcript: lnc-GK3P-1:3

Basic information

LNCipedia transcript ID: lnc-GK3P-1:3 
LNCipedia gene ID: lnc-GK3P-1
Location (hg38): chr4:165730780-165743071
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1554 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000509114; TCONS_00007892; NONHSAT099111
Alternative gene names: ENSG00000248358; XLOC_004147; linc-TMEM192-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1116 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GK3P-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM192-1:1
3.1 lnc-TMEM192-1:1
4.0 lnc-TMEM192-1:1
4.1 lnc-TMEM192-1:1
5.0 lnc-TMEM192-1:1
5.1 lnc-TRIM61-10:3
5.2 lnc-GK3P-1:3