Transcript: lnc-GLB1L2-1:3

Basic information

LNCipedia transcript ID: lnc-GLB1L2-1:3 
LNCipedia gene ID: lnc-GLB1L2-1
Ensembl Gene ID: ENSG00000255545
Ensembl Transcript ID: ENST00000533390
Location (hg38): chr11:134436735-134505040
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1863 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533390; ENST00000533390.1; RP11-627G23.1-001; OTTHUMT00000393642.1; ENST00000533390.5
Alternative gene names: ENSG00000255545; RP11-627G23.1; ENSG00000255545.2; OTTHUMG00000167181.2; ENSG00000255545.3; ENSG00000255545.7; AP004608.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.3449 non-coding 
CPAT coding probability 43.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GLB1L2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GLB1L2-1:3
3.1 lnc-GLB1L2-1:3
4.0 lnc-GLB1L2-1:3
4.1 lnc-GLB1L2-1:3
5.0 lnc-GLB1L2-1:3
5.1 lnc-GLB1L3-5:9
5.2 lnc-GLB1L2-1:3