Transcript: lnc-GLIPR1-3:3

Basic information

LNCipedia transcript ID: lnc-GLIPR1-3:3 
LNCipedia gene ID: lnc-GLIPR1-3
Ensembl Gene ID: ENSG00000257839
Ensembl Transcript ID: ENST00000547721
Location (hg38): chr12:76032658-76033897
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 779 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547721.1; RP11-290L1.2-001; OTTHUMT00000405849.1; NONHSAT029553
Alternative gene names: ENSG00000257839.1; RP11-290L1.2; OTTHUMG00000169785.1; AC011611.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.0797 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GLIPR1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GLIPR1-4:1
4.0 lnc-GLIPR1-4:1
4.1 lnc-GLIPR1-3:3
5.0 lnc-GLIPR1-3:3
5.1 lnc-SYT1-39:3
5.2 lnc-GLIPR1-3:3