Transcript: lnc-GLIPR1L1-1:3

Basic information

LNCipedia transcript ID: lnc-GLIPR1L1-1:3 
LNCipedia gene ID: lnc-GLIPR1L1-1
Ensembl Gene ID: ENSG00000254451
Ensembl Transcript ID: ENST00000548779
Location (hg38): chr12:75234740-75251865
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1751 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00020190; ENST00000548779.1; RP11-560G2.1-001; OTTHUMT00000405587.1; NONHSAT029523
Alternative gene names: XLOC_009807; linc-GLIPR1L1-1; ENSG00000254451.2; RP11-560G2.1; OTTHUMG00000165409.2; AC091534.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.7609 non-coding 
CPAT coding probability 2.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GLIPR1L1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GLIPR1L1-1:3
3.1 lnc-GLIPR1L1-1:3
4.0 lnc-GLIPR1L1-1:3
4.1 lnc-GLIPR1L1-1:3
5.0 lnc-GLIPR1L1-1:3
5.1 lnc-SYT1-47:4
5.2 lnc-GLIPR1L1-1:3