Transcript: lnc-GLIS3-1:1

Basic information

LNCipedia transcript ID: lnc-GLIS3-1:1 
LNCipedia gene ID: lnc-GLIS3-1
Location (hg38): chr9:3684076-3689626
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015789; ENST00000438147; ENST00000438147.1; RP11-509J21.4-001; OTTHUMT00000051554.1; NONHSAT130035
Alternative gene names: XLOC_007633; linc-RFX3; ENSG00000226669; RP11-509J21.4; ENSG00000226669.1; OTTHUMG00000019460.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.0959 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GLIS3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GLIS3-1:1
3.1 lnc-GLIS3-1:1
4.0 lnc-GLIS3-1:1
4.1 lnc-GLIS3-1:1
5.0 lnc-GLIS3-1:1
5.1 lnc-CER1-72:1
5.2 lnc-GLIS3-1:1