Transcript: lnc-GNA12-2:1

Basic information

LNCipedia transcript ID: lnc-GNA12-2:1 
LNCipedia gene ID: lnc-GNA12-2
Location (hg38): chr7:2717833-2722988
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3288 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00013117; ENST00000412266; ENST00000412266.1; AC006028.9-001; OTTHUMT00000325234.1; NONHSAT118821
Alternative gene names: XLOC_006335; linc-C7orf27-3; ENSG00000228246; AC006028.9; ENSG00000228246.1; OTTHUMG00000152108.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.502 non-coding 
CPAT coding probability 16.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNA12-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNA12-2:1
3.1 lnc-GNA12-2:1
4.0 lnc-GNA12-2:1
4.1 lnc-GNA12-2:1
5.0 lnc-GNA12-2:1
5.1 lnc-GRIFIN-9:1
5.2 lnc-GNA12-2:1