Transcript: lnc-GNAQ-2:2

Basic information

LNCipedia transcript ID: lnc-GNAQ-2:2 
LNCipedia gene ID: lnc-GNAQ-2
Ensembl Gene ID: ENSG00000260995
Ensembl Transcript ID: ENST00000566873
Location (hg38): chr9:79135422-79145674
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2432 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566873.1; RP11-165H23.1-001; OTTHUMT00000430279.1; NONHSAT131999
Alternative gene names: ENSG00000260995.1; RP11-165H23.1; OTTHUMG00000175501.1; AL512634.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.0489 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNAQ-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GNAQ-2:2
4.0 lnc-GNAQ-2:2
4.1 lnc-GNAQ-2:2
5.0 lnc-GNAQ-2:2
5.1 lnc-ALDH1A1-40:2
5.2 lnc-GNAQ-2:2