Transcript: lnc-GNAT3-1:1

Basic information

LNCipedia transcript ID: lnc-GNAT3-1:1 
LNCipedia gene ID: lnc-GNAT3-1
RefSeq ID: NR_110075
Location (hg38): chr7:80371517-80374439
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 507 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000437763; ENST00000437763.1; AC004862.6-001; OTTHUMT00000339766.2; NR_110075; NR_110075.1
Alternative gene names: ENSG00000232667; AC004862.6; ENSG00000232667.1; OTTHUMG00000155382.2; LOC101927269


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.6808 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNAT3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNAT3-1:1
3.1 lnc-GNAT3-1:1
4.0 lnc-GNAT3-1:1
4.1 lnc-GNAT3-1:1
5.0 lnc-GNAT3-1:1
5.1 lnc-SEMA3C-5:16
5.2 lnc-GNAT3-1:1