Transcript: lnc-GNAT3-1:17

Basic information

LNCipedia transcript ID: lnc-GNAT3-1:17 
LNCipedia gene ID: lnc-GNAT3-1
Ensembl Gene ID: ENSG00000232667
Ensembl Transcript ID: ENST00000617602
Location (hg38): chr7:80373840-80384124
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 500 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617602.4
Alternative gene names: ENSG00000232667.9; AC004862.6; ENSG00000232667.10; AC004862.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -116.2019 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNAT3-1:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GNAT3-1:17
4.1 lnc-GNAT3-1:17
5.0 lnc-GNAT3-1:17
5.1 lnc-SEMA3C-5:11
5.2 lnc-GNAT3-1:17