Transcript: lnc-GNAT3-1:2

Basic information

LNCipedia transcript ID: lnc-GNAT3-1:2 
LNCipedia gene ID: lnc-GNAT3-1
Location (hg38): chr7:80371186-80384979
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1272 bp
Exons: 6
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000437763.3
Alternative gene names: ENSG00000232667.5; AC004862.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.1983 non-coding 
CPAT coding probability 7.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNAT3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GNAT3-1:2
4.0 lnc-GNAT3-1:2
4.1 lnc-GNAT3-1:2
5.0 lnc-GNAT3-1:2
5.1 lnc-SEMA3C-5:7
5.2 lnc-GNAT3-1:2