Transcript: lnc-GNAT3-1:8

Basic information

LNCipedia transcript ID: lnc-GNAT3-1:8 
LNCipedia gene ID: lnc-GNAT3-1
Location (hg38): chr7:80330192-80372229
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1015 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT121737; ENST00000598433.1
Alternative gene names: ENSG00000232667.5; AC004862.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.7148 non-coding 
CPAT coding probability 9.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNAT3-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GNAT3-1:8
4.0 lnc-GNAT3-1:8
4.1 lnc-GNAT3-1:8
5.0 lnc-GNAT3-1:8
5.1 lnc-SEMA3C-5:24
5.2 lnc-GNAT3-1:8