Transcript: lnc-GNG11-3:1

Basic information

LNCipedia transcript ID: lnc-GNG11-3:1 
LNCipedia gene ID: lnc-GNG11-3
Ensembl Gene ID: ENSG00000236453
Ensembl Transcript ID: ENST00000415536
Location (hg38): chr7:94022833-94064723
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415536; ENST00000415536.1; AC003092.1-001; OTTHUMT00000341469.2; NONHSAT122022; ENST00000415536.5
Alternative gene names: ENSG00000236453; AC003092.1; ENSG00000236453.1; OTTHUMG00000155746.2; ENSG00000236453.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.3514 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GNG11-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNG11-1:1
3.1 lnc-GNG11-3:1
4.0 lnc-GNG11-3:1
4.1 lnc-GNG11-3:1
5.0 lnc-GNG11-3:1
5.1 lnc-LAMTOR4-92:5
5.2 lnc-GNG11-3:1