Transcript: lnc-GOLGA6A-1:3

Basic information

LNCipedia transcript ID: lnc-GOLGA6A-1:3 
LNCipedia gene ID: lnc-GOLGA6A-1
Ensembl Gene ID: ENSG00000248540
Ensembl Transcript ID: ENST00000563727
Location (hg38): chr15:74125915-74128838
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2924 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563727.1
Alternative gene names: ENSG00000248540.2; RP11-247C2.2; AC010931.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.405 non-coding 
CPAT coding probability 13.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GOLGA6A-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-247C2.2.1-1:3
4.1 lnc-RP11-247C2.2.1-1:3
5.0 lnc-RP11-247C2.2.1-1:3
5.1 lnc-PKM-51:3
5.2 lnc-GOLGA6A-1:3