Transcript: lnc-GOLGA8J-3:1

Basic information

LNCipedia transcript ID: lnc-GOLGA8J-3:1 
LNCipedia gene ID: lnc-GOLGA8J-3
Ensembl Gene ID: ENSG00000256802
Ensembl Transcript ID: ENST00000536835
Location (hg38): chr15:29674990-29679168
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2530 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536835.2; RP11-680F8.1-001; OTTHUMT00000417261.1; NONHSAT041299
Alternative gene names: ENSG00000256802.2; RP11-680F8.1; OTTHUMG00000172189.1; AC022613.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 73.6541 coding 
CPAT coding probability 25.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GOLGA8J-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GOLGA8J-3:1
4.0 lnc-GOLGA8J-3:1
4.1 lnc-GOLGA8J-3:1
5.0 lnc-GOLGA8J-3:1
5.1 lnc-SNRPN-99:7
5.2 lnc-GOLGA8J-3:1